Definition:  A change in allele frequency in a population of organisms over a period of time.
   
                                   Evolution
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 Standards
 for
 Biology

VOCABULARY:

See main column


VIDEO:
  PBS Series:
wow....
watch these short clips

Isn't evolution just a theory?

Who was Charles Darwin?

How do we know evolution happens?

How does evolution really work?

Did humans evolve?
Extra: Becoming Human...

Why does evolution matter now?

Why is evolution controversial anyway?

National Center for Science Education
Evolution Ed.

An excellent source for students and teachers

Teachers' Lessons...

Evidences?

"Intelligent Design"
on trial

A wealth of resources...

 Slide show

New hominid discovered?

Answering Essay Questions (below)

Notes from my college class (if you dare)

page 1

page 2

Some like to attack the concept of the eye as evidence of an organ that could not have come to exist by any other means than creation. The evolution of the eye (and specifically of color vision) are discussed in this article, providing a fine counter-argument to creationist arguments from incredulity.
(from the TalkOrigins Archive)
 

Video:
The evolution of the whales

Assorted videos
from  HHMI

 

On
the Origin
of Species
by Means of
Natural Selection,
or the

Preservation of Favoured Races in the Struggle
for Life

by
Charles Darwin, M.A.

The entire text is online.  Read it here.


 Class Ppt

 Evolution Web Exercise (that we did in class on Friday, Dec. 2)

 

Evolution Video:  What Darwin Never Knew (NOVA)
  Visit this web page


"There must be no barriers for freedom of inquiry.  There is no place for dogma in science.  The scientist is free, and must be free to ask any question, to doubt any assertion, to seek for any evidence, to correct any errors."

J. Robert Oppenheimer

"Science without religion is lame, religion without science is blind."
Albert Einstein

Amen to both of them.  With that, I'd invite you to explore a very misunderstood and misused subject of biological evolution, using the textbook, our discussions and materials in class, and the supplemental material found below.

  Ever changing Populations ppt. 
  Chromosome Comparison ppt.  (of us and other primates) 
  

  Fossil Evidence ppt. poster
  Evidence for Evolution ppt. poster

  Geologic Time Scale for South Carolina
  Evolution vs. Creationism website (no longer maintained, but loaded with excellent links)

 An interesting article: "The Fundamentalist Dogma of Atheism"

 17 misconceptions about evolution
 Religious views on Evolution (by religion/denomination)
 Worldwide public acceptance of Evolution (by country)  
 Natural Selection

 This article addresses the following 5 Major Misconceptions:  

  • Evolution has never been observed.
  • Evolution violates the 2nd law of thermodynamics.
  • There are no transitional fossils.
  • The theory of evolution says that life originated, and evolution proceeds, by random chance.
  • Evolution is only a theory; it hasn't been proved.

  Transitional Fossils
  An Index to Creationists' Claims

Terms and concepts
   you need to understand in this unit
(with corresponding textbook [Honors: Holt] page numbers, when applicable):

  Natural Selection (300)
       Overproduction, Variation, Struggle to survive,
        Descent with modification (299) [differential reproduction]

  Fitness (301)
  Adaptation (301)
  Sexual reproduction: READ
* Genetic variability may also be due to gene shuffling, crossing-over, recombination of DNA, or mutations.  When gametes are produced, each parent’s alleles may be arranged in new ways in the offspring. 
* Genetic changes or variability result in the transcription and translation of new or different proteins that will result in changes in the phenotype of an individual organism.
* Reproduction that results in allele combinations producing traits that improve an individual’s
chance of survival ensures the continuity of that life form over time.

  Asexual reproduction:
* Genetic variability can only occur through mutations in the DNA passed from parent to
offspring, which is another way these organisms achieve variations as the populations continue
over time.
* This may be accomplished by cell division: binary fission (reproduction of single-celled organisms) or mitosis (reproduction in multi-celled organisms).
* Examples of asexual reproduction are budding, fragmentation, and vegetative propagation.
* The asexual reproduction rate is much higher than sexual reproduction and produces many offspring that are suited to continuing life in the present environment.
* Asexual reproduction may have a disadvantage in changing conditions because genetically identical offspring respond to the environment in the same way. If a population lacks traits that enable them to survive and reproduce, the entire population could die off.

  Species: a group of organisms that share similar characteristics and can interbreed with one another to produce fertile offspring.
  Gene pool (318)
* Species that interbreed share a common gene pool (all genes, including all the different alleles,
of all of the individuals in a population).
* Because of the shared gene pool, a genetic change that occurs in one individual can spread through the population as that individual and its offspring mate with other individuals.
* If the genetic change increases fitness, it will eventually be found in many individuals in the
population.

 

Within a species there is a variability of phenotypic traits leading to diversity among the organisms of the species. The greater the diversity, the greater the chances are for that species to survive
during environmental changes.

Genetic Variability factors:
      Gene flow (321), Genetic Drift (322), Non-random Mating (sexual selection) (323), mutations, Natural Selection (324)

 Hardy-Weinberg Equilibrium: READ 
 In order for there to be NO evolution, the following assumptions must be met (in reality, only hypothetical):

· The population must be very large, no genetic drift occurs
· There must be no movement into or out of a population
· There must be random mating
· There must be no mutations within the gene pool
· There must be no natural selection                            (read more...)

  Speciation (326-331), gradualism and punctuated equilibrium (330)
  Adaptive Radiation (309)
  Divergent Evolution (309)  (flightless birds)
       
(How do YOUR parts match up with other creatures?)

  Convergent Evolution (309)
  Coevolution (310)
  Gradual Extinction: usually occurs at a slow rate and may be due to other organisms, changes in climate, or natural disasters. Speciation and gradual extinction occur at approximately the same rate.
  Mass Extinction: usually occurs when a catastrophic event changes the environment very suddenly (such as a massive volcanic eruption, or a meteor hitting the earth causing massive climatic changes). It is often impossible for a species to adapt to rapid and extreme environmental changes.
 

  Scientific evidences, sources of data for Evolution:

  Field of Anatomy (305)   ESKELETONS
* Scientists study homologous structures as one form of evidence to determine the possible relationship between the evolutionary paths of two species.
    > Organisms which have diverged from a common ancestor often have
homologous structures (similar characteristics resulting from common ancestry). The greater the numbers of shared structures between two species, the more closely the species are related.
    > Many species have
vestigial organs (structures with little or no function to the organism) that are remnants of structures that had important functions in ancestors of the species. The vestigial organs of one species are often homologous with structures in related species where the structure has remained functional.
* Also, the study of the anatomy of species located in different geographical locations reveals that species living in different locations under similar ecological conditions developed similar structures and behaviors.
* If a species encountered a different ecosystem due to a change in geographical location,favorable anatomical traits become established. A new species evolves with a shared common ancestor from the original population.  See also
Phylogeny (307).

  Field of Embryology (305) Watch this!
* Sometimes similarities in patterns of development or structures that are not obvious in adult organisms become evident when embryonic development is observed.
* The embryos of vertebrates are very similar in appearance early in development but may grow into different structures in the adult form.

  Field of Biochemistry (306)
The more similar the DNA and amino acid sequences in proteins of two species, the more likely they are to have diverged from a common ancestor.
* Biochemistry provides evidence of evolutionary relationships among species when anatomical structures may be hard to use. For example,
     >when species are so closely related that they do not appear to be different, or
     >when species are so diverse that they share few similar structures.

  Field of Paleontology (302)
*
The fossil record provides valid evidence of life forms and environments along a timeline and supports evolutionary relationships by showing the similarities between current species and ancient species.
* Comparing current and ancient species shows a pattern of gradual change from the past to the present.
* Examining the fossil record of Earth reveals a history that tells a story of the types of organisms that have lived on Earth (including those that are extinct) and the relative ages of those fossils.
* The fossil record is not complete because most organisms do not form fossils. Many of the gaps in the fossil record have been filled in as more fossils have been discovered.
* The older the fossils, the less resemblance there is to modern species.

  Geographic Distribution   (Also, read here)

"Another clue to patterns of past evolution is found in the natural geographic distribution of related species.  It is clear that major isolated land areas and island groups often evolved their own distinct plant and animal communities.  For instance, before humans arrived 60-40,000 years ago, Australia had more than 100 species of kangaroos, koalas, and other marsupials click this icon to hear the preceding term pronounced but none of the more advanced terrestrial placental mammals click this icon to hear the preceding term pronounced such as dogs, cats, bears, horses.  Land mammals were entirely absent from the even more isolated islands that make up Hawaii and New Zealand.  Each of these places had a great number of plant, insect, and bird species that were found nowhere else in the world.  The most likely explanation for the existence of Australia's, New Zealand's, and Hawaii's mostly unique biotic environments is that the life forms in these areas have been evolving in isolation from the rest of the world for millions of years."
from Evidence of Evolution http://anthro.palomar.edu/evolve/evolve_3.htm  

Field of Ichnology  (What?! Eeewww...)

 

Phylogenetic Trees (307)   site 1  site 2  Wow, site 3...
    

 

The tree of life. Click to download this pdf, then enlarge.

 

The rise of the modern horse...

Horse Evolution MacFadden 2005

What was Archaeopteryx?

 

 

Interesting insight from a blogger, godot
Genes coding for enzymes are hard to mutate, its too easy to break one of these molecular machines, so gene control here would be a light-toggle that sometimes sparks.

But many developmental traits are controlled not so much by protein sequence, but by the timing/amount of their production. Much variation in dog breeds can be accounted for by varying repeats of what was once thought "junk" DNA between the transcribed gene and promoter sequences upstream.

http://www.pnas.org/content/101/52/18058.full

Repetitive DNA is commonly miscopied during meiotic crossover, so there's a built-in source of variation that is more akin to a fader than a toggle. Its easy to imagine an isolated population drifting/being selected by "fader" increments till it was behaviorally or physiologically unlikely to interbreed with the parent population, and speciation occurs. If it outcompetes the parent species, Voilla! the paleontological punctuated equilibrium is explained.

 

 

 
 

 

 

 

 

Answering Essay Questions (borrowed from Joseph Travis, FSU)

An effective answer will not do the following:
  • restate the question (which wastes time)
  • list everything that could conceivably be relevant to the question (which not only wastes time but suggests to the grader that you can't distinguish relevant from irrelevant information)
  • place potentially useful statements of fact in random order (which forces the grader to attempt to discern your logic, usually to your detriment)
  • use vague or very general sentences (which forces the grader to guess what you really meant to write)

An effective answer will do the following:

  • state the major point as the first sentence (which declares an immediate focus for your answer and inspires confidence in the grader that you know what you are doing as you answer the question)
  • organize supportive or explanatory material to follow the major point (which helps the grader understand your logic and the intent of your answer)
  • use specific terms and careful language (which helps minimize ambiguity so that the grader does not misinterpret the meaning of the answer)